Adding New Data Into Hdf5 File Results An Empty Array
While playing with HDF5 package for Python I discovered a strange behavior. I want to insert more data into table. But somehow I cannot get it work properly. As you can see from th
Solution 1:
You are getting fromRow
AFTER you resize the X dataset. You need the value BEFORE your resize. See code below.
with h5py.File('data.hdf5', 'w') as hf:
# Add data to new file
dset = hf.create_dataset("X", data=tempArray1, compression="gzip", chunks=True, maxshape=(None,3), dtype='f4') # Size is as the size of tempArray1
print(hf["X"].shape[0])
# new location to get fromRow:
fromRow = hf["X"].shape[0]
# Append data existing file
hf["X"].resize((hf["X"].shape[0] + 10, 3)) # Size is as the size of X+ 10
print(hf["X"].shape[0])
hf["X"][fromRow:] = tempArray2
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